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Clinical Bacteriology

Code: MAC07004     Acronym: BAC

Keywords
Classification Keyword
OFICIAL Health Sciences

Instance: 2020/2021 - SP Ícone do Moodle

Active? Yes
Responsible unit: Microbiology Laboratory
Course/CS Responsible: MSc in Clinical Analysis

Cycles of Study/Courses

Acronym No. of Students Study Plan Curricular Years Credits UCN Credits ECTS Contact hours Total Time
MAC 18 Official Curriculum 1 - 6 56 162

Teaching language

Suitable for English-speaking students

Objectives

Clinical bacteriology has as main goal to develop theoretical and practical knowledge in medical bacteriology and infectious diseases for laboratory diagnosis, antimicrobial treatment, epidemiology and infection control. Students will also develop laboratorial data interpretation skills and oral and written communication capacity.

 

Learning outcomes and competences

This unit syllabus includes the theoretical and practical aspects for the development of a structured knowledge in Clinical Bacteriology, essential to respond to actual and future professional challenges in this area.

It is intended the acquisition of specific skills: i) to choose the appropriated laboratorial method for diagnostic a bacterial infection; ii) to perform the laboratorial tests for diagnostic of a bacterial infection and to evaluate the bacterial susceptibility to antimicrobials, as well as to know the basic steps of bacterial typing methods; iii) to identify limitations of diagnostic methods (e.g. limitations of available methodologies to accurately identify bacterial isolates); iv) to choose and interpret appropriately the antibiotic susceptibility teste according to the purpose of the resulting data (predict the clinical efficacy or to detect acquired resistance mechanisms); v) to identify the advantages and limitations of different typing methods; vi) to express appropriately the laboratorial results in the final report.

Throughout the presentation of works/reports, enhancement of abilities to treat and interpret data, and to communicate orally and written will be promoted.

Working method

Presencial

Program

Theoretical
Role of Bacteriology laboratory in the diagnostic
Bacterial diversity and evolution
Bacterial identification methods
Concepts and methodologies for antimicrobial susceptibility testing and antimicrobial resistance mechanisms detection.
Infectious agents and antimicrobial susceptibility, physiopathology and diagnostic methods of: genito-urinary tract infections, respiratory, central nervous system, gastrointestinal, skin and soft -tissue, pus and blood.
Procedures and concepts in epidemiology and infection control.

Laboratorial
Bacteriology lab safety
Sampling and transport of biological products
Laboratory methods for diagnostic of bacterial infections (serodiagnostic, cultural and molecular methods)
Antimicrobial susceptibility tests 
Bacterial typing methods (serological, DNA-based and spectroscopic)

Mandatory literature

Murray Patrick R. 340; Manual of clinical microbiology. ISBN: 1-55581-255-4
Forbes Betty A.; Bailey & Scott.s diagnostic microbiology. ISBN: 0-323-01678-2

Comments from the literature

Other relevant publications are mentioned during the introductory class as well as for each topic lectured

Teaching methods and learning activities

Lectures and laboratory classes.

The lectures complemented with the oral presentation of a review on a topic of this UC, as well as the final exam, provide the acquisition of fundamental knowledge in the area of Clinical Bacteriology. The practical component, as well as consolidate theoretical knowledge, enables the development of critical thinking, synthesis and improves communication (oral and written) skills.

 

Evaluation Type

Distributed evaluation with final exam

Assessment Components

designation Weight (%)
Exame 60,00
Teste 20,00
Trabalho laboratorial 20,00
Total: 100,00

Amount of time allocated to each course unit

designation Time (hours)
Apresentação/discussão de um trabalho científico 0,50
Estudo autónomo 36,00
Frequência das aulas 56,00
Trabalho de investigação 10,00
Total: 102,50

Eligibility for exams

Accordingly to current evaluation guidelines of Pharmacy Faculty, Porto University.

Calculation formula of final grade

Evaluation Formula:
Oral presentation - 20%
Laboratorial exam - 20%
Final exam - 60%

Observations


If students are unable to attend theoretical and laboratory classes due to contagion control or confinement associated with the COVID-19 pandemic classes will take place as follows:

I-Contagion control with the need to reduce the number of students in face-to-face classes:
a) Theoretical classes will be taught in person to a small number of students following the rules stipulated by DGS and FFUP and simultaneously in streaming to the remaining students. These classes will be recorded and made available via Moodle so that students who have difficulties in attending them synchronously can do so later.
b) In laboratory classes the theoretical-practical contents will be recorded in Panopto and provided before the class to the students via  Moodle.  In face-to-face classes students will learn and execute protocols, and solve and discuss practical cases. Students will work individually following the rules stipulated by DGS and FFUP.
c) The assessment of knowledge by final exam will be carried out in accordance with the rules stipulated by FFUP. 




II-Containment situation:




a) Theoretical classes will be taught and recorded synchronously via Zoom-Colibri. The recorded classes will be made available on Moodle, so that students who have difficulty watching them synchronously can do so later. 
b) The theoretical-practical contents of the laboratory classes will be recorded in Panopto and provided to students via Moodle. Videos related to laboratory procedures will also be provided. Synchronous classes will be used to solve exercises and practical cases for the application and sedimentation of theoretical-practical concepts, for discussion and resolution of doubts.
c) The assessment of knowledge by final exam will be carried out in accordance with the rules stipulated by FFUP.


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