Preliminary Study of Deep Learning Algorithms for Metaplasia Detection in Upper Gastrointestinal Endoscopy

• Type: Article in International Conference Proceedings Book
• Date: 2022

Authors

Neto, A (Author) Other; Ferreira, S (Author) Other; Libânio, D (Author) FMUP; Mario Dinis Ribeiro (Author) FMUP; Coimbra, M (Author) FCUP; Cunha, A (Author) Other

Conference proceedings International

Title: Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST

Pages: 34-50

11th EAI International Conference on Wireless Mobile Communication and Healthcare, MobiHealth 2022

30 November 2022 through 2 December 2022

Indexing

Scopus

Other information

Authenticus ID: P-00Y-CF4

DOI: 10.1007/978-3-031-32029-3_4

Abstract (EN): Precancerous conditions such as intestinal metaplasia (IM) have a key role in gastric cancer development and can be detected during endoscopy. During upper gastrointestinal endoscopy (UGIE), misdiagnosis can occur due to technical and human factors or by the nature of the lesions, leading to a wrong diagnosis which can result in no surveillance/treatment and impairing the prevention of gastric cancer. Deep learning systems show great potential in detecting precancerous gastric conditions and lesions by using endoscopic images and thus improving and aiding physicians in this task, resulting in higher detection rates and fewer operation errors. This study aims to develop deep learning algorithms capable of detecting IM in UGIE images with a focus on model explainability and interpretability. In this work, white light and narrow-band imaging UGIE images collected in the Portuguese Institute of Oncology of Porto were used to train deep learning models for IM classification. Standard models such as ResNet50, VGG16 and InceptionV3 were compared to more recent algorithms that rely on attention mechanisms, namely the Vision Transformer (ViT), trained in 818 UGIE images (409 normal and 409 IM). All the models were trained using a 5-fold cross-validation technique and for validation, an external dataset will be tested with 100 UGIE images (50 normal and 50 IM). In the end, explainability methods (Grad-CAM and attention rollout) were used for more clear and more interpretable results. The model which performed better was ResNet50 with a sensitivity of 0.75 (±0.05), an accuracy of 0.79 (±0.01), and a specificity of 0.82 (±0.04). This model obtained an AUC of 0.83 (±0.01), where the standard deviation was 0.01, which means that all iterations of the 5-fold cross-validation have a more significant agreement in classifying the samples than the other models. The ViT model showed promising performance, reaching similar results compared to the remaining models. © 2023, ICST Institute for Computer Sciences, Social Informatics and Telecommunications Engineering.

Language: English

Type (Professor's evaluation): Scientific