Data Employed in the Construction of a Composite Protein Database for Proteogenomic Analyses of Cephalopods Salivary Apparatus

• Type: Article in International Scientific Journal
• Date: 2020

Authors

Almeida, D (Author) Other; Domínguez-Pérez, D (Author) Other; Matos, A (Author) Other; Agüero-Chapin, G (Author) Other; Castaño, Y (Author) Other; Vitor Vasconcelos (Author) FCUP; Alexandre Campos (Author) FCUP; Agostinho Antunes (Author) FCUP

Journal

The Journal is awaiting validation by the Administrative Services.

Title: DATA

Vol. 5

Pages: 1-11

Indexing

ISI Web of Knowledge - 1 Citation

Scopus - 1 Citation

Other information

Authenticus ID: P-00T-32Y

DOI: 10.3390/data5040110

Abstract (EN): Here we provide all datasets and details applied in the construction of a composite protein database required for the proteogenomic analyses of the article Putative Antimicrobial Peptides of the Posterior Salivary Glands from the Cephalopod Octopus vulgaris Revealed by Exploring a Composite Protein Database. All data, subdivided into six datasets, are deposited at the Mendeley Data repository as follows. Dataset_1 provides our composite database All_Databases_5950827_sequences.fasta derived from six smaller databases composed of (i) protein sequences retrieved from public databases related to cephalopods' salivary glands, (ii) proteins identified with Proteome Discoverer software using our original data obtained by shotgun proteomic analyses of posterior salivary glands (PSGs) from three Octopus vulgaris specimens (provided as Dataset_2) and (iii) a non-redundant antimicrobial peptide (AMP) database. Dataset_3 includes the transcripts obtained by de novo assembly of 16 transcriptomes from cephalopods' PSGs using CLC Genomics Workbench. Dataset_4 provides the proteins predicted by the TransDecoder tool from the de novo assembly of 16 transcriptomes of cephalopods' PSGs. Further details about database construction, as well as the scripts and command lines used to construct them, are deposited within Dataset_5 and Dataset_6. The data provided in this article will assist in unravelling the role of cephalopods' PSGs in feeding strategies, toxins and AMP production. Dataset (DOI): 10.17632/df8w8dct3b.1 (Dataset_1); 10.17632/hrydnjz937.1 (Dataset_2); 10.17632/fjnnjv6nnn.1 (Dataset_3); 10.17632/h94v3bk4j6.1 (Dataset_4); 10.17632/p6vnj6ssrf.1 (Dataset_5); 10.17632/x73ff3n744.1 (Dataset_6). Dataset License: CC BY 4.0.

Language: English

Type (Professor's evaluation): Scientific

No. of pages: 11