Adaptive Sojourn Time HSMM for Heart Sound Segmentation

• Type: Article in International Scientific Journal
• Date: 2019

Authors

Oliveira, J (Author) Other; Renna, F (Author) FCUP; Mantadelis, T (Author) Other; Coimbra, M (Author) FCUP

Journal

Title: IEEE Journal of Biomedical and Health Informatics

Vol. 23

Pages: 642-649

ISSN: 2168-2194

Publisher: IEEE

Indexing

ISI Web of Knowledge - 21 Citations

Scopus - 34 Citations

Other information

Authenticus ID: P-00Q-9FX

DOI: 10.1109/jbhi.2018.2841197

Abstract (EN): Heart sounds are difficult to interpret due to events with very short temporal onset between them (tens of milliseconds) and dominant frequencies that are out of the human audible spectrum. Computer-assisted decision systems may help but they require robust signal processing algorithms. In this paper, we propose a new algorithm for heart sound segmentation using a hidden semi-Markov model. The proposed algorithm infers more suitable sojourn time parameters than those currently suggested by the state of the art, through a maximum likelihood approach. We test our approach over three different datasets, including the publicly available PhysioNet and Pascal datasets. We also release a pediatric dataset composed of 29 heart sounds. In contrast with any other dataset available online, the annotations of the heart sounds in the released dataset contain information about the beginning and the ending of each heart sound event. Annotations were made by two cardiopulmonologists. The proposed algorithm is compared with the current state of the art. The results show a significant increase in segmentation performance, regardless the dataset or the methodology presented. For example, when using the PhysioNet dataset to train and to evaluate the HSMMs, our algorithm achieved average an F-score of 92% compared to 89% achieved by the algorithm described in [D.B. Springer, L. Tarassenko, and G. D. Clifford, "Logistic regressionHSMM-based heart sound segmentation," IEEE Transactions on Biomedical Engineering, vol. 63, no. 4, pp. 822-832, 2016]. In this sense, the proposed approach to adapt sojourn time parameters represents an effective solution for heart sound segmentation problems, even when the training data does not perfectly express the variability of the testing data.

Language: English

Type (Professor's evaluation): Scientific

No. of pages: 8